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Test: ParaMonte 1.5.1 :: MPI Parallel Kernel - Code Coverage Report Lines: 54 55 98.2 %
Date: 2021-01-08 13:07:16 Functions: 3 3 100.0 %
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      42             : 
      43             : !>  \brief This module contains classes and procedures contents of external files.
      44             : !>  \author Amir Shahmoradi
      45             : 
      46             : module FileContents_mod
      47             : 
      48             :     use JaggedArray_mod, only: CharVec_type
      49             :     use Err_mod, only: Err_type
      50             :     implicit none
      51             : 
      52             :     character(*), parameter                 :: MODULE_NAME = "@FileContents_mod"
      53             : 
      54             :     !> The FileContents_type class.
      55             :     type :: FileContents_type
      56             :         integer                             :: numRecord    !< number f records (lines) in file.
      57             :         type(CharVec_type), allocatable     :: Line(:)      !< The list of lines in the file.
      58             :         type(Err_type)                      :: Err          !< The error object.
      59             :     contains
      60             :         procedure, nopass                   :: getNumRecordInFile
      61             :         procedure, nopass                   :: getFileContents
      62             :     end type FileContents_type
      63             : 
      64             :     interface FileContents_type
      65             :         module procedure :: constructFileContents
      66             :     end interface FileContents_type
      67             : 
      68             : !%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
      69             : 
      70             : contains
      71             : 
      72             : !%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
      73             : 
      74             :     !> \brief
      75             :     !> The constructor of the [FileContents_type](@ref filecontents_type) class.
      76             :     !>
      77             :     !> @param[in] filePath      :   The path to the file.
      78             :     !> @param[in] delEnabled    :   A logical flag indicating whether the file should be deleted upon return (**optional**, default = `.false.`).
      79             :     !>
      80             :     !> \return
      81             :     !> `FileContents` : An object of [FileContents_type](@ref filecontents_type) class.
      82          21 :     function constructFileContents(filePath,delEnabled) result(FileContents)
      83             : #if INTEL_COMPILER_ENABLED && defined DLL_ENABLED && (OS_IS_WINDOWS || defined OS_IS_DARWIN)
      84             :         !DEC$ ATTRIBUTES DLLEXPORT :: constructFileContents
      85             : #endif
      86             :         implicit none
      87             :         character(*), intent(in)            :: filePath
      88             :         logical     , intent(in), optional  :: delEnabled
      89             :         type(FileContents_type)             :: FileContents
      90          21 :         call getFileContents(filePath,FileContents%Line,FileContents%numRecord,FileContents%Err,delEnabled)
      91          21 :         if (FileContents%Err%occurred) FileContents%Err%msg = "@constructFileContents()" // FileContents%Err%msg
      92          21 :     end function constructFileContents
      93             : 
      94             : !%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
      95             : 
      96             :     !> \brief
      97             :     !> Returns the entire content of a file as an array of strings.
      98             :     !>
      99             :     !> @param[in]   path        :   The path to the file.
     100             :     !> @param[out]  Contents    :   A list of lines in the file. Each array element corresponds to one line (record) in the file.
     101             :     !> @param[out]  numRecord   :   The number of lines in the file.
     102             :     !> @param[out]  Err         :   An object of [Err_type](@ref err_mod::err_type) indicating whether error has occurred during the file IO.
     103             :     !> @param[out]  delEnabled  :   An optional logical value indicating whether the file should be deleted upon successful reading of it.
     104         379 :     subroutine getFileContents(path, Contents, numRecord, Err, delEnabled)
     105             : #if INTEL_COMPILER_ENABLED && defined DLL_ENABLED && (OS_IS_WINDOWS || defined OS_IS_DARWIN)
     106             :         !DEC$ ATTRIBUTES DLLEXPORT :: getFileContents
     107             : #endif
     108          21 :         use JaggedArray_mod, only: CharVec_type
     109             :         use String_mod, only: num2str
     110             :         use Err_mod, only: Err_type
     111             :         implicit none
     112             :         character(len=*), intent(in)                    :: path
     113             :         type(CharVec_type), allocatable, intent(out)    :: Contents(:)
     114             :         logical, intent(in), optional                   :: delEnabled
     115             :         type(Err_type), intent(out)                     :: Err
     116             :         integer, intent(out)                            :: numRecord
     117             : 
     118             :         character(99999)                                :: record
     119             :         integer                                         :: fileUnit, irecord, i
     120             :         logical                                         :: delEnabledDefault, isOpen, fileExists
     121             : 
     122             :         character(*), parameter                         :: PROCEDURE_NAME = MODULE_NAME//"@getFileContents()"
     123             : 
     124         379 :         Err%occurred = .false.
     125         379 :         Err%msg = ""
     126             : 
     127         379 :         delEnabledDefault = .false.
     128         379 :         if (present(delEnabled)) then
     129          18 :             delEnabledDefault = delEnabled
     130             :         end if
     131             : 
     132         379 :         call getNumRecordInFile(path,numRecord,Err)
     133         379 :         if (Err%occurred) then
     134             :         ! LCOV_EXCL_START
     135             :             Err%msg = PROCEDURE_NAME // Err%msg
     136             :             return
     137             :         end if
     138             :         ! LCOV_EXCL_STOP
     139             : 
     140       12232 :         allocate(Contents(numRecord))
     141             : 
     142             :         open( newunit = fileUnit & ! LCOV_EXCL_LINE
     143             :             , status = "old" & ! LCOV_EXCL_LINE
     144             :             , file = path & ! LCOV_EXCL_LINE
     145             : #if defined INTEL_COMPILER_ENABLED && defined OS_IS_WINDOWS
     146             :             , SHARED & ! LCOV_EXCL_LINE
     147             : #endif
     148         379 :             )
     149       12232 :         do irecord = 1,numRecord
     150       11853 :             read(fileUnit,"(A)", iostat=Err%stat) record
     151       12232 :             if (Err%stat==0) then
     152       11853 :                 Contents(irecord)%record = trim(adjustl(record))
     153             :             ! LCOV_EXCL_START
     154             :             elseif (is_iostat_end(Err%stat)) then
     155             :                 Err%occurred = .true.
     156             :                 Err%msg =   PROCEDURE_NAME // ": End-of-file error occurred while expecting " // &
     157             :                             num2str(numRecord-irecord+1) // " records in file='" // path // "'."
     158             :                 return
     159             :             elseif (is_iostat_eor(Err%stat)) then
     160             :                 Err%occurred = .true.
     161             :                 Err%msg =   PROCEDURE_NAME // ": End-of-record error occurred while reading line number " // &
     162             :                             num2str(irecord) // " from file='" // path // "'."
     163             :                 return
     164             :             else
     165             :                 Err%occurred = .true.
     166             :                 Err%msg =   PROCEDURE_NAME // ": Unknown error occurred while reading line number " // &
     167             :                             num2str(irecord) // " from file='" // path // "'."
     168             :                 return
     169             :             end if
     170             :             ! LCOV_EXCL_STOP
     171             :         end do
     172             : 
     173             :         ! attempt to delete the file repeatedly. This is important on windows systems as the file often remains locked.
     174             : 
     175         379 :         blockDeleteFile: if (delEnabledDefault) then
     176             : 
     177             :             ! Attempt to delete the file repeatedly
     178             : 
     179          36 :             loopDeleteFile: do i = 1, 100
     180          36 :                 inquire(file=path, opened=isOpen, exist=fileExists, iostat = Err%stat)
     181          36 :                 if (Err%stat==0) then
     182          36 :                     if (fileExists) then
     183          18 :                         if (.not. isOpen) then
     184             :                             open( newunit = fileUnit    & ! LCOV_EXCL_LINE
     185             :                                 , status = "replace"    & ! LCOV_EXCL_LINE
     186             :                                 , iostat = Err%stat     & ! LCOV_EXCL_LINE
     187             :                                 , file = path           & ! LCOV_EXCL_LINE
     188             : #if defined INTEL_COMPILER_ENABLED && defined OS_IS_WINDOWS
     189             :                                 , SHARED                & ! LCOV_EXCL_LINE
     190             : #endif
     191           0 :                                 )
     192             :                         end if
     193          18 :                         close(fileUnit, status="delete", iostat = Err%stat) ! parallel processes cannot delete the same file. Err%stat is required to handle exceptions.
     194             :                     else
     195          18 :                         return
     196             :                     end if
     197             :                 end if
     198             :             end do loopDeleteFile
     199             : 
     200             :         end if blockDeleteFile
     201             : 
     202             :         ! If file deletion fails or if it should not be deleted, then simply close the file and return.
     203             : 
     204         361 :         close(fileUnit, status = "keep", iostat = Err%stat) ! parallel processes cannot delete the same file. Err%stat is required to handle exceptions.
     205             : 
     206             :         !if (Err%stat>0) then
     207             :         !! LCOV_EXCL_START
     208             :         !    Err%occurred = .true.
     209             :         !    Err%msg = PROCEDURE_NAME // "Error occurred while attempting to close or delete the open file='" // path // "'."
     210             :         !    return
     211             :         !end if
     212             :         !! LCOV_EXCL_STOP
     213             : 
     214         379 :     end subroutine getFileContents
     215             : 
     216             : !%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     217             : 
     218             :     !> \brief
     219             :     !> Returns the number of lines in a file.
     220             :     !>
     221             :     !> @param[in]   filePath    :   The path to the file.
     222             :     !> @param[out]  numRecord   :   The number of lines in the file.
     223             :     !> @param[out]  Err         :   An object of [Err_type](@ref err_mod::err_type) indicating whether error has occurred during the file IO.
     224             :     !> @param[in]   exclude     :   A string. If any line matches `exclude`, it will NOT be counted.
     225         982 :     subroutine getNumRecordInFile(filePath,numRecord,Err,exclude)
     226             : #if INTEL_COMPILER_ENABLED && defined DLL_ENABLED && (OS_IS_WINDOWS || defined OS_IS_DARWIN)
     227             :         !DEC$ ATTRIBUTES DLLEXPORT :: getNumRecordInFile
     228             : #endif
     229         379 :         use Constants_mod, only: IK
     230             :         implicit none
     231             :         character(len=*), intent(in)                :: filePath
     232             :         integer(IK)     , intent(out)               :: numRecord
     233             :         type(Err_type)  , intent(out)               :: Err
     234             :         character(*)    , intent(in)    , optional  :: exclude
     235             :         character(len=1)                            :: record
     236             :         integer                                     :: fileUnit
     237             :         logical                                     :: fileExists, fileIsOpen, excludeIsPresent
     238             :         integer                                     :: iostat
     239             : 
     240             :         character(*), parameter                     :: PROCEDURE_NAME = "@getNumRecordInFile()"
     241             : 
     242         603 :         Err%occurred = .false.
     243         603 :         Err%msg = ""
     244         603 :         excludeIsPresent = present(exclude)
     245             : 
     246             :         ! Check if file exists
     247             :         ! GFortran 7.3 bug: If file is not open, compiler assumes internal file if `number` is specified, causing runtime error.
     248             : 
     249         603 :         inquire( file=filePath, exist=fileExists, opened=fileIsOpen, number=fileUnit, iostat=Err%stat )
     250         603 :         if (Err%stat/=0) then
     251             :         ! LCOV_EXCL_START
     252             :             Err%occurred = .true.
     253             :             Err%msg = PROCEDURE_NAME // ": Error occurred while inquiring the status of file='" // filePath // "'."
     254             :             return
     255             :         end if
     256             :         ! LCOV_EXCL_STOP
     257             : 
     258         603 :         if (.not.fileExists) then
     259             :         ! LCOV_EXCL_START
     260             :             Err%occurred = .true.
     261             :             Err%msg = PROCEDURE_NAME // ": The input file='" // filePath // "' does not exist."
     262             :             return
     263             :         end if
     264             :         ! LCOV_EXCL_STOP
     265             : 
     266         603 :         if (fileIsOpen) close(unit=fileUnit,iostat=Err%stat)
     267         603 :         if (Err%stat>0) then
     268             :         ! LCOV_EXCL_START
     269             :             Err%occurred = .true.
     270             :             Err%msg = PROCEDURE_NAME // ": Error occurred while attempting to close the open input file='" // filePath // "'."
     271             :             return
     272             :         end if
     273             :         ! LCOV_EXCL_STOP
     274             : 
     275             :         open( newunit = fileUnit & ! LCOV_EXCL_LINE
     276             :             , iostat = Err%stat & ! LCOV_EXCL_LINE
     277             :             , file = filePath & ! LCOV_EXCL_LINE
     278             :             , status = "old" & ! LCOV_EXCL_LINE
     279             : #if defined INTEL_COMPILER_ENABLED && defined OS_IS_WINDOWS
     280             :             , SHARED & ! LCOV_EXCL_LINE
     281             : #endif
     282         603 :             )
     283         603 :         if (Err%stat>0) then
     284             :         ! LCOV_EXCL_START
     285             :             Err%occurred = .true.
     286             :             Err%msg = PROCEDURE_NAME // ": Error occurred while opening input file='" // filePath // "'."
     287             :             return
     288             :         end if
     289             :         ! LCOV_EXCL_STOP
     290             : 
     291         603 :         numRecord = 0_IK
     292      296845 :         do
     293      297448 :             read(fileUnit,'(A)',iostat=iostat) record
     294      297448 :             if(iostat==0) then
     295      296845 :                 if (excludeIsPresent) then
     296       41670 :                     if (trim(adjustl(record))/=exclude) numRecord = numRecord + 1_IK
     297             :                 else
     298      255175 :                     numRecord = numRecord + 1_IK
     299             :                 end if
     300      296845 :                 cycle
     301         603 :             elseif(is_iostat_end(iostat) .or. is_iostat_eor(iostat)) then
     302         603 :                 exit
     303             :             ! LCOV_EXCL_START
     304             :             else
     305             :                 Err%occurred = .true.
     306             :                 Err%stat = iostat
     307             :                 Err%msg = PROCEDURE_NAME // ": Error occurred while reading input file='" // filePath // "'."
     308             :                 return
     309             :             end if
     310             :             ! LCOV_EXCL_STOP
     311             :         end do
     312             : 
     313         603 :         close(fileUnit,iostat=Err%stat)
     314         603 :         if (Err%stat>0) then
     315             :         ! LCOV_EXCL_START
     316             :             Err%occurred = .true.
     317             :             Err%msg =   PROCEDURE_NAME // ": Error occurred while attempting to close the open input file='" // &
     318             :                         filePath // "' after counting the number of records in file."
     319             :             return
     320             :         end if
     321             :         ! LCOV_EXCL_STOP
     322             : 
     323         603 :     end subroutine getNumRecordInFile
     324             : 
     325             : !%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
     326             : 
     327             : end module FileContents_mod ! LCOV_EXCL_LINE

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